Method to Follow mRNA Synthesis, Atlas of Protein-Coding Genes in Brains


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Method to Follow mRNA Synthesis, Atlas of Protein-Coding Genes in Brains

Using a novel single-cell RNA sequencing approach, a team from the Oncode Institute has uncovered new details about the rates of messenger RNA synthesis and degradation in mammalian cells. As reported in Science this week, the researchers developed a method — called single-cell EU-labeled RNA sequencing — that simultaneously quantifies metabolically labeled and preexisting unlabeled transcripts in thousands of individual cells. They use the technique to determine the mRNA synthesis and degradation rates during the cell cycle and during differentiation of intestinal stem cells, revealing important regulatory strategies with distinct consequences for controlling the dynamic range and precision of gene expression. "These findings advance our understanding of how individual cells in heterogeneous populations shape their gene expression dynamics," the scientists write.

The first draft of a post-2020 global biodiversity framework recently released by the secretariat of the Convention on Biological Diversity (CBD) does not put enough emphasis on genetic diversity, according to a letter from Stockholm University's Linda Laikre and an international group of scientists. "We are deeply concerned that the goal suggested for genetic diversity — the basic element for evolutionary processes and all biological diversity — is weak," they write in Science. "It is encouraging that the CBD post-2020 draft includes genetic diversity in one of the five main goals. However, including explicit protection for genetic diversity in wild as well as domestic species, and strategies to measure the effectiveness of efforts toward that goal, will ensure that signatories prioritize this important aspect of biodiversity conservation."

Members of the Human Protein Atlas (HPA) project present an atlas of the protein-coding genes in the human, pig, and mouse brains in this week's Science. They perform a comprehensive molecular dissection of 10 major brain regions and multiple subregions using different transcriptomics methods and antibody-based mapping, and report their findings in an open-access Brain Atlas resource available through the HPA website.

Increasing the number of guide RNAs (gRNAs) may not be an effective way to boost the efficacy of CRISPR homing gene drives, according to a new study in Science Advances. To test the hypothesis that multiple gRNAs can be used to overcome the evolution of resistance alleles that may hamper a gene drive, investigators from Cornell University developed a computational model incorporating various factors affecting drives with multiple gRNAs such as timing of cleavage, reduction in homology-directed repair efficiency due to imperfect homology, Cas9 activity saturation, gRNA activity level variance, and incomplete homology-directed repair. "We find that homing drives have an optimal number of gRNAs, usually between two and eight, depending on the specific drive type and performance parameters," the study's authors write. This finding, they add, contradicts the notion that "resistance rates can be reduced to arbitrarily low levels by gRNA multiplexing," while highlighting the need for combined approaches to counter resistance evolution.

Story source:Genome Web
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